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Papers dealing with duplicated genes in fish, gene and genome duplications, and with the evolution of novel gene functions after duplication events

Amores A, Force A, Yan Y-L, Joly L, Amemiya C, Fritz A, Ho RK, Langeland J, Prince V, Wang Y-L, Westerfield M, Ekker M, Postlethwait JH (1998) Zebrafish hox clusters and vertebrate genome evolution. Science 282:1711-1714
Amores A, Amemiya CT, Postlethwait J (2001) Genome duplication and evolution of Hox clusters in teleosts. Am Zool (in press)
Aparicio S (2000) Vertebrate evolution: recent perspectives from fish. Trends Genet 16:54-56.
Aparicio S, Hawker K, Cottage A, Mikawa Y, Zuo L, Venkatesh B, Chen E, Krumlauf R, Brenner S (1997) Organization of the Fugu rubripes Hox clusters: evidence for continuing evolution of vertebrate Hox complexes. Nat Genet 16:79-83
Barbazuk WB, Korf I, Kadavi C, Heyen J, Tata S, Wun E, Bedell JA, McPherson JD, Johnson SL (2000) The syntenic relationships of the zebrafish and human genomes. Genome Research 10:1351-1358
Ekker M, Akimenko MA, Allende ML, Smith R, Drouin G, Langille RM, Weinberg ES, Westerfield M (1997) Relationships among msx gene structure and function in zebrafish and other vertebrates. Mol Biol Evol 14:1008-1022
Elgar G, Clark MS, Meek S, Smith S, Warner S, Edwards YJK, Bouchireb N, Cottage A, Yeo GSH, Umrania Y, Williams G, Brenner S. (1999) Generation and analysis of 25 Mb of genomic DNA from the pufferfish Fugu rubripes by sequence scanning. Genome Res 9:960-971
Force A, Lynch M, Pickett FB, Amores A, Yan Y-l, Postlethwait J (1999) Preservation of duplicate genes by complementary, degenerative mutations. Genetics 151:1531-1545.
Gates MA, Kim L, Cardozo T, Sirotkin HI, Dougan ST, Lashkari D, Abagyan R. Schier AF, Talbot WS (1999) A genetic linkage map for zebrafish: comparative analysis and localization of genes and expressed sequences. Genome Research 9:334-347
Gibson TJ, Spring J (1998) Genetic redundancy in vertebrates: polyploidy and persistence of genes encoding multidomain proteins. Trends Genet 14:46-49
Holland PW (1997) Vertebrate evolution: something fishy about Hox genes. Curr Biol 7:R570-R572
Hughes AL (1994) The evolution of functionally novel proteins after gene duplication. Proc R Soc Lond B 256:119-124
Hughes AL (1999) Adaptive evolution of genes and genomes. Oxford University Press, New York
Hughes MK, Hughes AL (1993) Evolution of duplicate genes in a tetraploid animal, Xenopus laevis. Mol Biol Evol 10:1360-1369
Laforest L, Brown CW, Poleo G, Geraudie J, Tada M, Ekker M, Akimenko M-A (1998) Involvement of the Sonic Hedgehog, patched 1 and bmp2 genes in patterning of the zebrafish dermal fin rays. Development 125:4175-4184
Lynch M, Force A (2000) The probability of duplicate gene preservation by subfunctionalization. Genetics 154:459-473
Lynch M, Conery JS (2000) The evolutionary fate and consequences of duplicate genes. Science 290:1151-1155
Málaga-Trillo E, Meyer A (2001) Genome duplications and accelerated evolution of Hox genes and cluster architecture in teleost fishes. American Zool (in press)
Martinez-Barbera JP, Toresson H, Da Rocha S, Krauss S (1997) Cloning and expression of three members of the zebrafish Bmp family: Bmp2a, Bmp2b and Bmp4. Gene 198:53-59
Meyer A, Schartl M (1999) Gene and genome duplications in vertebrates: the one-to-four (-to-eight in fish) rule and the evolution of novel gene functions. Curr Opin Cell Biol 11:699-704
Morizot DC, Slaugenhaupt SA, Kallman KD, Chakravarti A (1991) Genetic linkage map of fishes of the genus Xiphophorous (Teleostei: Poeciliidae). Genetics 127:399-410
Naruse K, Fukamachi S, Mitani H, Kondo M, Matsuoka T, Kondo S, Hanamura N, Morita Y, Hasegawa K, Nishigaki R, Shimada A, Wada H, Kusakabe T, Suzuki N, Kinoshita M, Kanamori A, Terado T, Kimura H, Nonaka M, Shima A (2000) A detailed linkage map of medaka, Oryzias latipes: comparative genomics and genome evolution. Genetics 154:1773-1784
Ohno S (1970) Evolution by gene duplication. New York. Springer Verlag
Ohno S (1973) Ancient linkage groups and frozen accidents. Nature 244:259-262
Postlethwait JH, Woods IG, Ngo-Hazelett P, Yan Y-L, Kelly PD, Chu F. Huang H, Hill-Force A, Talbot WS (2000) Zebrafish comparative genomics and the origins of vertebrate chromosomes. Genome Res 10:1890-1902
Taylor JS, Van de Peer Y, Braasch I, Meyer A (2001) Comparative genomics provides evidence for an ancient genome duplication in fish. Phil Trans Roy Soc 356:1661-1679
Taylor, J., Van de Peer, Y., Meyer, A. (2001) Genome duplication, divergent resolution and speciation. Trends Genet 17:299-301
Toyama R, Dawid IB (1997) lim6, A novel LIM homeobox gene in the zebrafish: comparison of its expression pattern with lim1. Dev Dyn 209:406-417
Van de Peer, Y., Taylor, J.S., Braasch, I., Meyer, A. (2001) The ghost of selection past: rates of evolution and functional divergence in anciently duplicated genes. J Mol Evol 53:434-444
Van de Peer, Y., Taylor, J.S., Joseph, J., Meyer, A. (2002) Wanda: A database of duplicated fish genes. Nucleic Acids Res 30 (in press)
Van de Peer, Y., Frickey, T., Taylor, J.S., Meyer, A. (2002) Dealing with saturation at the amino acid level: A case study based on anciently duplicated zebrafish genes. Gene (in press)
Venkatesh B, Gilligan P, Brenner S (2000) Fugu: a compact vertebrate reference genome. Febs Lett 476:3-7
Wittbrodt J, Meyer A, Schartl M (1998) More genes in fish? BioEssays 20:511-512
Woods IG, Kelly PD, Chu F, Ngo-Hazelett P, Yan Y-L, Huang H, Postlethwait JH, Talbot WS (2000) A comparative map of the zebrafish genome. Genome Res 10:1903-1914

Last update 9/12/2K1